Bacteroides caccae ATCC 43185

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

GC Content: 41.9%, Released Date: Jan. 3, 2007 #17793

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAVM02000001
1.3 MB
1173 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000002
498.2 KB
380 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000003
488.3 KB
376 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000004
421.8 KB
375 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000005
360.9 KB
329 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000006
312.1 KB
251 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000007
267.1 KB
244 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000008
264.9 KB
248 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000009
128.8 KB
108 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000010
126.0 KB
97 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000011
104.7 KB
86 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000012
42.6 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000013
42.5 KB
38 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000014
35.0 KB
35 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000015
20.4 KB
27 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000016
12.7 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000017
10.8 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000018
10.8 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000019
7.3 KB
4 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000020
3.5 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_AAVM02000021
1.4 KB
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Bacteroides caccae ATCC 43185

Search Genome

Sequences

PubMed Search for Bacteroides caccae ATCC 43185

Related Genomes