Bacteroides fragilis 638R

The Wellcome Trust Sanger Institute

Genome Size: 5.4 megabases, Released Date: July 23, 2010 #19775

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

genome
FQ312004
5.1 MB
4326 CDS

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References

Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis
Patrick,S., Blakely,G.W., Houston,S., Moore,J., Abratt,V.R., Bertalan,M., Cerdeno-Tarraga,A.M., Quail,M.A., Corton,N., Corton,C., Bignell,A., Barron,A., Clark,L., Bentley,S.D. and Parkhill,J. Microbiology (Reading, Engl.) 156 (PT 11), 3255-3269 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacteroides fragilis 638R

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Sequences

References

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