Bacteroides fragilis NCTC 9343

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Genome Size: 5.24 megabases, GC Content: 43.1%, Released Date: March 3, 2005 #16719

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_003228
5.0 MB
4184 CDS

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plasmid pBF9343
NC_006873
35.7 KB
47 CDS

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References

Extensive DNA inversions in the B. fragilis genome control variable gene expression
Cerdeno-Tarraga,A.M., Patrick,S., Crossman,L.C., Blakely,G., Abratt,V., Lennard,N., Poxton,I., Duerden,B., Harris,B., Quail,M.A., Barron,A., Clark,L., Corton,C., Doggett,J., Holden,M.T., Larke,N., Line,A., Lord,A., Norbertczak,H., Ormond,D., Price,C., Rabbinowitsch,E., Woodward,J., Barrell,B. and Parkhill,J. Science 307 (5714), 1463-1465 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacteroides fragilis NCTC 9343

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Sequences

References

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