Bacteroides thetaiotaomicron VPI-5482

Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine

Genome Size: 6.33 megabases, GC Content: 42.9%, Released Date: March 29, 2003 #16721

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_004663
6.0 MB
4778 CDS

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Circular View
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plasmid p5482
NC_004703
32.3 KB
38 CDS

Table view
Circular View
Artemis Viewer

References

A genomic view of the human-Bacteroides thetaiotaomicron symbiosis
Xu,J., Bjursell,M.K., Himrod,J., Deng,S., Carmichael,L.K., Chiang,H.C., Hooper,L.V. and Gordon,J.I. Science 299 (5615), 2074-2076 (2003)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bacteroides thetaiotaomicron VPI-5482

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Sequences

References

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