Bermanella marisrubri

J. Craig Venter Institute

GC Content: 44.0%, Released Date: April 28, 2006 #17812

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAQH01000001
518.8 KB
518 CDS

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whole genome shotgun sequence
NZ_AAQH01000002
395.0 KB
358 CDS

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whole genome shotgun sequence
NZ_AAQH01000003
210.0 KB
193 CDS

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whole genome shotgun sequence
NZ_AAQH01000004
157.7 KB
148 CDS

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whole genome shotgun sequence
NZ_AAQH01000005
146.5 KB
135 CDS

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whole genome shotgun sequence
NZ_AAQH01000006
142.7 KB
137 CDS

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whole genome shotgun sequence
NZ_AAQH01000007
137.7 KB
125 CDS

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whole genome shotgun sequence
NZ_AAQH01000008
119.2 KB
118 CDS

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whole genome shotgun sequence
NZ_AAQH01000009
118.6 KB
115 CDS

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whole genome shotgun sequence
NZ_AAQH01000010
117.7 KB
116 CDS

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whole genome shotgun sequence
NZ_AAQH01000011
94.3 KB
83 CDS

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whole genome shotgun sequence
NZ_AAQH01000012
93.9 KB
94 CDS

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whole genome shotgun sequence
NZ_AAQH01000013
91.8 KB
97 CDS

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whole genome shotgun sequence
NZ_AAQH01000014
79.7 KB
72 CDS

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whole genome shotgun sequence
NZ_AAQH01000015
78.1 KB
75 CDS

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whole genome shotgun sequence
NZ_AAQH01000016
77.8 KB
79 CDS

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whole genome shotgun sequence
NZ_AAQH01000017
74.8 KB
77 CDS

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whole genome shotgun sequence
NZ_AAQH01000018
74.8 KB
69 CDS

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whole genome shotgun sequence
NZ_AAQH01000019
64.5 KB
76 CDS

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whole genome shotgun sequence
NZ_AAQH01000020
58.1 KB
57 CDS

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whole genome shotgun sequence
NZ_AAQH01000021
47.5 KB
48 CDS

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whole genome shotgun sequence
NZ_AAQH01000022
44.7 KB
39 CDS

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whole genome shotgun sequence
NZ_AAQH01000023
44.4 KB
46 CDS

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whole genome shotgun sequence
NZ_AAQH01000024
43.4 KB
44 CDS

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whole genome shotgun sequence
NZ_AAQH01000025
42.1 KB
41 CDS

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whole genome shotgun sequence
NZ_AAQH01000026
40.3 KB
45 CDS

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whole genome shotgun sequence
NZ_AAQH01000027
40.2 KB
33 CDS

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whole genome shotgun sequence
NZ_AAQH01000028
32.8 KB
24 CDS

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whole genome shotgun sequence
NZ_AAQH01000029
31.4 KB
26 CDS

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whole genome shotgun sequence
NZ_AAQH01000030
29.8 KB
38 CDS

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whole genome shotgun sequence
NZ_AAQH01000031
29.2 KB
29 CDS

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whole genome shotgun sequence
NZ_AAQH01000032
27.6 KB
22 CDS

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whole genome shotgun sequence
NZ_AAQH01000033
20.4 KB
19 CDS

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whole genome shotgun sequence
NZ_AAQH01000034
18.1 KB
17 CDS

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whole genome shotgun sequence
NZ_AAQH01000035
17.5 KB
17 CDS

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whole genome shotgun sequence
NZ_AAQH01000036
15.5 KB
16 CDS

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whole genome shotgun sequence
NZ_AAQH01000037
12.1 KB
13 CDS

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whole genome shotgun sequence
NZ_AAQH01000038
11.1 KB
9 CDS

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whole genome shotgun sequence
NZ_AAQH01000039
10.8 KB
11 CDS

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whole genome shotgun sequence
NZ_AAQH01000040
10.4 KB
9 CDS

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whole genome shotgun sequence
NZ_AAQH01000041
9.2 KB
12 CDS

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whole genome shotgun sequence
NZ_AAQH01000042
6.2 KB
5 CDS

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whole genome shotgun sequence
NZ_AAQH01000043
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AAQH01000044
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAQH01000045
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AAQH01000046
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AAQH01000047
1.0 KB
1 CDS

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Taxonomy

External Links

Bermanella marisrubri

Search Genome

Sequences

PubMed Search for Bermanella marisrubri

Related Genomes