Bifidobacterium animalis subsp. lactis DSM 10140

Danisco USA Inc. , Danisco France SAS , The Pennsylvania State University, Department of Food Science

Genome Size: 1.9 megabases, Released Date: June 19, 2009 #16735

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_012815
1.8 MB
1566 CDS

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References

Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04
Barrangou,R., Briczinski,E.P., Traeger,L.L., Loquasto,J.R., Richards,M., Horvath,P., Coute-Monvoisin,A.C., Leyer,G., Rendulic,S., Steele,J.L., Broadbent,J.R., Oberg,T., Dudley,E.G., Schuster,S., Romero,D.A. and Roberts,R.F. J. Bacteriol. 191 (13), 4144-4151 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bifidobacterium animalis subsp. lactis DSM 10140

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Sequences

References

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