Bifidobacterium bifidum NCIMB 41171

Broad Institute

GC Content: 62.8%, Released Date: Aug. 26, 2008 #17816

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABQP01000001
35.3 KB
29 CDS

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whole genome shotgun sequence
NZ_ABQP01000002
67.9 KB
59 CDS

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whole genome shotgun sequence
NZ_ABQP01000003
63.3 KB
53 CDS

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whole genome shotgun sequence
NZ_ABQP01000004
169.3 KB
143 CDS

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whole genome shotgun sequence
NZ_ABQP01000005
118.4 KB
80 CDS

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whole genome shotgun sequence
NZ_ABQP01000006
21.6 KB
14 CDS

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whole genome shotgun sequence
NZ_ABQP01000007
53.1 KB
53 CDS

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whole genome shotgun sequence
NZ_ABQP01000008
80.7 KB
69 CDS

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whole genome shotgun sequence
NZ_ABQP01000009
226.0 KB
195 CDS

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whole genome shotgun sequence
NZ_ABQP01000010
19.4 KB
22 CDS

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whole genome shotgun sequence
NZ_ABQP01000011
166.9 KB
175 CDS

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whole genome shotgun sequence
NZ_ABQP01000012
77.7 KB
73 CDS

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whole genome shotgun sequence
NZ_ABQP01000013
98.3 KB
98 CDS

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whole genome shotgun sequence
NZ_ABQP01000014
83.6 KB
73 CDS

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whole genome shotgun sequence
NZ_ABQP01000015
24.6 KB
27 CDS

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whole genome shotgun sequence
NZ_ABQP01000016
10.0 KB
11 CDS

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whole genome shotgun sequence
NZ_ABQP01000017
103.8 KB
78 CDS

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whole genome shotgun sequence
NZ_ABQP01000018
32.9 KB
30 CDS

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whole genome shotgun sequence
NZ_ABQP01000019
108.5 KB
88 CDS

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whole genome shotgun sequence
NZ_ABQP01000020
17.7 KB
17 CDS

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whole genome shotgun sequence
NZ_ABQP01000021
277.5 KB
227 CDS

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whole genome shotgun sequence
NZ_ABQP01000022
41.8 KB
33 CDS

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whole genome shotgun sequence
NZ_ABQP01000023
88.5 KB
78 CDS

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whole genome shotgun sequence
NZ_ABQP01000024
86.9 KB
61 CDS

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whole genome shotgun sequence
NZ_ABQP01000025
36.4 KB
29 CDS

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whole genome shotgun sequence
NZ_ABQP01000026
10.4 KB
9 CDS

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whole genome shotgun sequence
NZ_ABQP01000027
5.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABQP01000028
2.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABQP01000029
859 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQP01000030
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABQP01000031
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABQP01000032
603 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABQP01000033
2.5 KB
1 CDS

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Taxonomy

External Links

Bifidobacterium bifidum NCIMB 41171

Search Genome

Sequences

PubMed Search for Bifidobacterium bifidum NCIMB 41171

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