Bifidobacterium dentium ATCC 27679

Baylor College of Medicine

Genome Size: 2.6 megabases, Released Date: Aug. 25, 2010 #20176

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

contig00001, whole genome shotgun sequence
NZ_AEEQ01000001
17.1 KB
20 CDS

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contig00002, whole genome shotgun sequence
NZ_AEEQ01000002
38.5 KB
29 CDS

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contig00003, whole genome shotgun sequence
NZ_AEEQ01000003
163.7 KB
136 CDS

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contig00004, whole genome shotgun sequence
NZ_AEEQ01000004
102.6 KB
82 CDS

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contig00005, whole genome shotgun sequence
NZ_AEEQ01000005
10.8 KB
9 CDS

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contig00006, whole genome shotgun sequence
NZ_AEEQ01000006
66.0 KB
60 CDS

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contig00007, whole genome shotgun sequence
NZ_AEEQ01000007
432.8 KB
391 CDS

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contig00008, whole genome shotgun sequence
NZ_AEEQ01000008
5.2 KB
2 CDS

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contig00009, whole genome shotgun sequence
NZ_AEEQ01000009
476.7 KB
514 CDS

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contig00010, whole genome shotgun sequence
NZ_AEEQ01000010
445.4 KB
409 CDS

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contig00011, whole genome shotgun sequence
NZ_AEEQ01000011
371.1 KB
298 CDS

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contig00012, whole genome shotgun sequence
NZ_AEEQ01000012
55.3 KB
45 CDS

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contig00013, whole genome shotgun sequence
NZ_AEEQ01000013
81.4 KB
70 CDS

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contig00014, whole genome shotgun sequence
NZ_AEEQ01000014
96.6 KB
76 CDS

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contig00015, whole genome shotgun sequence
NZ_AEEQ01000015
113.2 KB
107 CDS

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contig00016, whole genome shotgun sequence
NZ_AEEQ01000016
71.0 KB
63 CDS

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contig00017, whole genome shotgun sequence
NZ_AEEQ01000017
9.6 KB
14 CDS

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contig00018, whole genome shotgun sequence
NZ_AEEQ01000018
5.5 KB
0 CDS

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contig00019, whole genome shotgun sequence
NZ_AEEQ01000019
3.3 KB
4 CDS

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contig00020, whole genome shotgun sequence
NZ_AEEQ01000020
2.4 KB
2 CDS

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contig00021, whole genome shotgun sequence
NZ_AEEQ01000021
1.4 KB
2 CDS

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contig00022, whole genome shotgun sequence
NZ_AEEQ01000022
1.3 KB
1 CDS

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contig00023, whole genome shotgun sequence
NZ_AEEQ01000023
694 bytes
1 CDS

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contig00024, whole genome shotgun sequence
NZ_AEEQ01000024
522 bytes
1 CDS

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Taxonomy

External Links

Bifidobacterium dentium ATCC 27679

Search Genome

Sequences

PubMed Search for Bifidobacterium dentium ATCC 27679

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