Bifidobacterium longum DJO10A

DOE Joint Genome Institute

Genome Size: 2.38 megabases, GC Content: 59.1%, Released Date: Oct. 14, 2002 #17821

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AABM02000001
360.2 KB
321 CDS

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whole genome shotgun sequence
NZ_AABM02000002
152.0 KB
115 CDS

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whole genome shotgun sequence
NZ_AABM02000003
147.0 KB
125 CDS

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whole genome shotgun sequence
NZ_AABM02000004
132.6 KB
89 CDS

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whole genome shotgun sequence
NZ_AABM02000005
124.3 KB
120 CDS

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whole genome shotgun sequence
NZ_AABM02000006
121.0 KB
99 CDS

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whole genome shotgun sequence
NZ_AABM02000007
115.7 KB
89 CDS

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whole genome shotgun sequence
NZ_AABM02000008
113.0 KB
73 CDS

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whole genome shotgun sequence
NZ_AABM02000009
89.4 KB
56 CDS

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whole genome shotgun sequence
NZ_AABM02000010
78.5 KB
66 CDS

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whole genome shotgun sequence
NZ_AABM02000011
71.8 KB
37 CDS

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whole genome shotgun sequence
NZ_AABM02000012
63.7 KB
52 CDS

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whole genome shotgun sequence
NZ_AABM02000013
58.7 KB
39 CDS

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whole genome shotgun sequence
NZ_AABM02000014
50.5 KB
45 CDS

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whole genome shotgun sequence
NZ_AABM02000015
42.4 KB
34 CDS

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whole genome shotgun sequence
NZ_AABM02000016
40.5 KB
32 CDS

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whole genome shotgun sequence
NZ_AABM02000017
37.1 KB
30 CDS

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whole genome shotgun sequence
NZ_AABM02000018
34.6 KB
29 CDS

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whole genome shotgun sequence
NZ_AABM02000019
32.6 KB
20 CDS

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whole genome shotgun sequence
NZ_AABM02000020
32.2 KB
26 CDS

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whole genome shotgun sequence
NZ_AABM02000021
31.8 KB
24 CDS

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whole genome shotgun sequence
NZ_AABM02000022
26.9 KB
22 CDS

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whole genome shotgun sequence
NZ_AABM02000023
24.5 KB
22 CDS

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whole genome shotgun sequence
NZ_AABM02000024
22.6 KB
16 CDS

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whole genome shotgun sequence
NZ_AABM02000025
21.8 KB
30 CDS

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whole genome shotgun sequence
NZ_AABM02000026
21.8 KB
25 CDS

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whole genome shotgun sequence
NZ_AABM02000027
20.8 KB
21 CDS

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whole genome shotgun sequence
NZ_AABM02000028
19.8 KB
15 CDS

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whole genome shotgun sequence
NZ_AABM02000029
19.1 KB
15 CDS

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whole genome shotgun sequence
NZ_AABM02000030
18.8 KB
16 CDS

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whole genome shotgun sequence
NZ_AABM02000031
18.8 KB
18 CDS

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whole genome shotgun sequence
NZ_AABM02000032
17.4 KB
15 CDS

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whole genome shotgun sequence
NZ_AABM02000033
13.7 KB
13 CDS

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whole genome shotgun sequence
NZ_AABM02000034
11.3 KB
7 CDS

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whole genome shotgun sequence
NZ_AABM02000035
10.5 KB
9 CDS

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whole genome shotgun sequence
NZ_AABM02000036
10.4 KB
6 CDS

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whole genome shotgun sequence
NZ_AABM02000037
8.7 KB
8 CDS

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whole genome shotgun sequence
NZ_AABM02000038
8.7 KB
11 CDS

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whole genome shotgun sequence
NZ_AABM02000039
5.2 KB
4 CDS

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whole genome shotgun sequence
NZ_AABM02000040
5.0 KB
7 CDS

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whole genome shotgun sequence
NZ_AABM02000041
4.7 KB
4 CDS

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whole genome shotgun sequence
NZ_AABM02000042
3.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AABM02000043
3.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AABM02000044
3.1 KB
4 CDS

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whole genome shotgun sequence
NZ_AABM02000045
3.1 KB
4 CDS

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whole genome shotgun sequence
NZ_AABM02000046
3.0 KB
4 CDS

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whole genome shotgun sequence
NZ_AABM02000047
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AABM02000048
2.7 KB
2 CDS

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whole genome shotgun sequence
NZ_AABM02000049
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AABM02000050
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AABM02000051
2.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000052
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000053
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AABM02000054
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AABM02000055
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AABM02000056
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000057
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AABM02000058
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AABM02000059
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000060
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000061
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_AABM02000062
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000063
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000064
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000065
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000066
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AABM02000067
982 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000068
959 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABM02000069
955 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABM02000070
937 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABM02000071
924 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000072
921 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000073
919 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000074
908 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000075
888 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000076
881 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABM02000077
872 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000078
854 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABM02000079
854 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000080
845 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000081
834 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000082
772 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABM02000083
754 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000084
740 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000085
730 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000086
727 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000087
710 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000088
707 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000089
703 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000090
701 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000091
675 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABM02000092
659 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000093
657 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000094
646 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000095
635 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000096
635 bytes
2 CDS

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whole genome shotgun sequence
NZ_AABM02000097
623 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000098
622 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000099
621 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000100
614 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000101
602 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000102
583 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000103
575 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000104
561 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000105
557 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000106
518 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000107
518 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000108
511 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000109
482 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000110
481 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000111
441 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000112
417 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000113
403 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000114
362 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000115
316 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000116
284 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000117
277 bytes
1 CDS

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whole genome shotgun sequence
NZ_AABM02000118
210 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000119
188 bytes
0 CDS

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whole genome shotgun sequence
NZ_AABM02000120
185 bytes
1 CDS

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Taxonomy

External Links

Bifidobacterium longum DJO10A

Search Genome

Sequences

PubMed Search for Bifidobacterium longum DJO10A

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