Bifidobacterium sp. 12_1_47BFAA

Broad Institute

#20178

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

cont1.1, whole genome shotgun sequence
ADCN01000001
56.6 KB
51 CDS

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cont1.2, whole genome shotgun sequence
ADCN01000002
18.0 KB
17 CDS

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cont1.3, whole genome shotgun sequence
ADCN01000003
45.8 KB
39 CDS

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cont1.4, whole genome shotgun sequence
ADCN01000004
14.0 KB
12 CDS

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cont1.5, whole genome shotgun sequence
ADCN01000005
60.4 KB
51 CDS

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cont1.6, whole genome shotgun sequence
ADCN01000006
4.3 KB
4 CDS

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cont1.7, whole genome shotgun sequence
ADCN01000007
1.9 KB
3 CDS

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cont1.8, whole genome shotgun sequence
ADCN01000008
27.1 KB
21 CDS

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cont1.9, whole genome shotgun sequence
ADCN01000009
62.3 KB
62 CDS

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cont1.10, whole genome shotgun sequence
ADCN01000010
98.2 KB
82 CDS

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cont1.11, whole genome shotgun sequence
ADCN01000011
2.6 KB
2 CDS

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cont1.12, whole genome shotgun sequence
ADCN01000012
151.4 KB
134 CDS

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cont1.13, whole genome shotgun sequence
ADCN01000013
81.3 KB
72 CDS

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cont1.14, whole genome shotgun sequence
ADCN01000014
62.5 KB
51 CDS

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cont1.15, whole genome shotgun sequence
ADCN01000015
45.4 KB
43 CDS

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cont1.16, whole genome shotgun sequence
ADCN01000016
90.3 KB
77 CDS

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cont1.17, whole genome shotgun sequence
ADCN01000017
75.4 KB
57 CDS

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cont1.18, whole genome shotgun sequence
ADCN01000018
29.2 KB
27 CDS

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cont1.19, whole genome shotgun sequence
ADCN01000019
23.6 KB
15 CDS

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cont1.20, whole genome shotgun sequence
ADCN01000020
93.1 KB
73 CDS

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cont1.21, whole genome shotgun sequence
ADCN01000021
34.8 KB
33 CDS

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cont1.22, whole genome shotgun sequence
ADCN01000022
125.6 KB
95 CDS

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cont1.23, whole genome shotgun sequence
ADCN01000023
117.8 KB
79 CDS

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cont1.24, whole genome shotgun sequence
ADCN01000024
59.8 KB
42 CDS

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cont1.25, whole genome shotgun sequence
ADCN01000025
57.7 KB
44 CDS

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cont1.26, whole genome shotgun sequence
ADCN01000026
3.7 KB
5 CDS

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cont1.27, whole genome shotgun sequence
ADCN01000027
16.6 KB
15 CDS

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cont1.28, whole genome shotgun sequence
ADCN01000028
18.8 KB
21 CDS

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cont1.29, whole genome shotgun sequence
ADCN01000029
54.6 KB
56 CDS

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cont1.30, whole genome shotgun sequence
ADCN01000030
17.8 KB
13 CDS

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cont1.31, whole genome shotgun sequence
ADCN01000031
17.9 KB
19 CDS

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cont1.32, whole genome shotgun sequence
ADCN01000032
35.8 KB
30 CDS

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cont1.33, whole genome shotgun sequence
ADCN01000033
61.5 KB
50 CDS

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cont1.34, whole genome shotgun sequence
ADCN01000034
1.3 KB
1 CDS

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cont1.35, whole genome shotgun sequence
ADCN01000035
58.7 KB
50 CDS

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cont1.36, whole genome shotgun sequence
ADCN01000036
52.5 KB
43 CDS

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cont1.37, whole genome shotgun sequence
ADCN01000037
5.0 KB
5 CDS

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cont1.38, whole genome shotgun sequence
ADCN01000038
12.2 KB
20 CDS

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cont1.39, whole genome shotgun sequence
ADCN01000039
5.1 KB
8 CDS

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cont1.40, whole genome shotgun sequence
ADCN01000040
36.2 KB
35 CDS

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cont1.41, whole genome shotgun sequence
ADCN01000041
51.7 KB
44 CDS

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cont1.42, whole genome shotgun sequence
ADCN01000042
51.2 KB
58 CDS

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cont1.43, whole genome shotgun sequence
ADCN01000043
48.8 KB
46 CDS

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cont1.44, whole genome shotgun sequence
ADCN01000044
39.5 KB
33 CDS

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cont1.45, whole genome shotgun sequence
ADCN01000045
34.3 KB
30 CDS

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cont1.46, whole genome shotgun sequence
ADCN01000046
32.7 KB
30 CDS

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cont1.47, whole genome shotgun sequence
ADCN01000047
27.0 KB
37 CDS

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cont1.48, whole genome shotgun sequence
ADCN01000048
1.9 KB
2 CDS

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cont1.49, whole genome shotgun sequence
ADCN01000049
25.4 KB
20 CDS

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cont1.50, whole genome shotgun sequence
ADCN01000050
22.2 KB
18 CDS

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cont1.51, whole genome shotgun sequence
ADCN01000051
21.0 KB
10 CDS

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cont1.52, whole genome shotgun sequence
ADCN01000052
20.9 KB
15 CDS

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cont1.53, whole genome shotgun sequence
ADCN01000053
20.4 KB
17 CDS

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cont1.54, whole genome shotgun sequence
ADCN01000054
15.4 KB
12 CDS

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cont1.55, whole genome shotgun sequence
ADCN01000055
12.2 KB
19 CDS

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cont1.56, whole genome shotgun sequence
ADCN01000056
11.1 KB
9 CDS

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cont1.57, whole genome shotgun sequence
ADCN01000057
11.0 KB
10 CDS

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cont1.58, whole genome shotgun sequence
ADCN01000058
9.2 KB
11 CDS

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cont1.59, whole genome shotgun sequence
ADCN01000059
8.7 KB
12 CDS

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cont1.60, whole genome shotgun sequence
ADCN01000060
7.8 KB
11 CDS

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cont1.61, whole genome shotgun sequence
ADCN01000061
7.3 KB
11 CDS

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cont1.62, whole genome shotgun sequence
ADCN01000062
6.0 KB
0 CDS

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cont1.63, whole genome shotgun sequence
ADCN01000063
2.7 KB
5 CDS

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cont1.64, whole genome shotgun sequence
ADCN01000064
1.8 KB
2 CDS

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cont1.65, whole genome shotgun sequence
ADCN01000065
1.5 KB
2 CDS

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cont1.66, whole genome shotgun sequence
ADCN01000066
1.4 KB
2 CDS

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cont1.67, whole genome shotgun sequence
ADCN01000067
1.4 KB
1 CDS

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cont1.68, whole genome shotgun sequence
ADCN01000068
1.2 KB
2 CDS

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cont1.69, whole genome shotgun sequence
ADCN01000069
1015 bytes
0 CDS

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cont1.70, whole genome shotgun sequence
ADCN01000070
1006 bytes
1 CDS

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cont1.71, whole genome shotgun sequence
ADCN01000071
994 bytes
1 CDS

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cont1.72, whole genome shotgun sequence
ADCN01000072
929 bytes
1 CDS

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cont1.73, whole genome shotgun sequence
ADCN01000073
840 bytes
2 CDS

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cont1.74, whole genome shotgun sequence
ADCN01000074
835 bytes
1 CDS

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cont1.75, whole genome shotgun sequence
ADCN01000075
819 bytes
1 CDS

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cont1.76, whole genome shotgun sequence
ADCN01000076
762 bytes
1 CDS

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cont1.77, whole genome shotgun sequence
ADCN01000077
723 bytes
0 CDS

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cont1.78, whole genome shotgun sequence
ADCN01000078
635 bytes
0 CDS

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cont1.79, whole genome shotgun sequence
ADCN01000079
606 bytes
2 CDS

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cont1.80, whole genome shotgun sequence
ADCN01000080
571 bytes
1 CDS

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cont1.81, whole genome shotgun sequence
ADCN01000081
520 bytes
1 CDS

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cont1.82, whole genome shotgun sequence
ADCN01000082
517 bytes
1 CDS

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cont1.83, whole genome shotgun sequence
ADCN01000083
507 bytes
1 CDS

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cont1.84, whole genome shotgun sequence
ADCN01000084
505 bytes
1 CDS

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cont1.85, whole genome shotgun sequence
ADCN01000085
500 bytes
1 CDS

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cont1.86, whole genome shotgun sequence
ADCN01000086
500 bytes
1 CDS

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Taxonomy

External Links

Bifidobacterium sp. 12_1_47BFAA

Search Genome

Sequences

PubMed Search for Bifidobacterium sp. 12_1_47BFAA

Related Genomes