Bordetella avium 197N

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Genome Size: 3.7 megabases, GC Content: 61.6%, Released Date: Sept. 29, 2006 #16742

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

complete genome
NC_010645
3.6 MB
3381 CDS

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References

Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction
Sebaihia,M., Preston,A., Maskell,D.J., Kuzmiak,H., Connell,T.D., King,N.D., Orndorff,P.E., Miyamoto,D.M., Thomson,N.R., Harris,D., Goble,A., Lord,A., Murphy,L., Quail,M.A., Rutter,S., Squares,R., Squares,S., Woodward,J., Parkhill,J. and Temple,L.M. J. Bacteriol. 188 (16), 6002-6015 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Bordetella avium 197N

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Sequences

References

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