Bordetella pertussis Tohama I

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Genome Size: 4.1 megabases, GC Content: 67.7%, Released Date: Aug. 12, 2003 #16745

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
  Parkhill,J., Sebaihia,M., Preston,A., Murphy,L.D., Thomson,N., Harris,D.E., Holden,M.T., Churcher,C.M., Bentley,S.D., Mungall,K.L., Cerdeno-Tarraga,A.M., Temple,L., James,K., Harris,B., Quail,M.A., Achtman,M., Atkin,R., Baker,S., Basham,D., Bason,N., Cherevach,I., Chillingworth,T., Collins,M., Cronin,A., Davis,P., Doggett,J., Feltwell,T., Goble,A., Hamlin,N., Hauser,H., Holroyd,S., Jagels,K., Leather,S., Moule,S., Norberczak,H., O'Neil,S., Ormond,D., Price,C., Rabbinowitsch,E., Rutter,S., Sanders,M., Saunders,D., Seeger,K., Sharp,S., Simmonds,M., Skelton,J., Squares,R., Squares,S., Stevens,K., Unwin,L., Whitehead,S., Barrell,B.G. and Maskell,D.J. Nat. Genet. 35 (1), 32-40 (2003)
  PubMed, PubGet, HubMed

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