Borrelia burgdorferi N40

University of Maryland School of Medicine - Institute for Genome Sciences , J. Craig Venter Institute

Genome Size: 1.3377 megabases, GC Content: 28.1%, Released Date: Nov. 16, 2010 #19786

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
CP002228
881.0 KB
809 CDS

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plasmid N40_cp26
CP002239
25.9 KB
26 CDS

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plasmid N40_cp32-10
CP002240
29.4 KB
40 CDS

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plasmid N40_cp32-12
CP002238
27.1 KB
38 CDS

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plasmid N40_cp32-4
CP002235
15.5 KB
18 CDS

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plasmid N40_cp32-5
CP002227
28.9 KB
36 CDS

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plasmid N40_cp32-7
CP002229
17.1 KB
22 CDS

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plasmid N40_cp32-9
CP002242
29.9 KB
35 CDS

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plasmid N40_cp9
CP002231
8.5 KB
9 CDS

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plasmid N40_lp17
CP002241
20.2 KB
16 CDS

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plasmid N40_lp25
CP002234
22.8 KB
10 CDS

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plasmid N40_lp28-2
CP002232
28.8 KB
30 CDS

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plasmid N40_lp28-4
CP002236
28.7 KB
23 CDS

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plasmid N40_lp28-5
CP002233
26.0 KB
17 CDS

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plasmid N40_lp36
CP002230
28.5 KB
21 CDS

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plasmid N40_lp38
CP002237
37.0 KB
28 CDS

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plasmid N40_lp54
CP001651
52.5 KB
64 CDS

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References

Whole Genome Sequences of Thirteen Isolates of Borrelia burgdorferi
Schutzer,S.E., Fraser-Liggett,C.M., Casjens,S.R., Qiu,W.G., Dunn,J.J., Mongodin,E.F. and Luft,B.J. J. Bacteriol. (2010) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Borrelia burgdorferi N40

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Sequences

References

Related Genomes