Borrelia duttonii Ly

Unitï¿½ des Rickettsies - Marseille , Marseille-Nice Genopole

Genome Size: 1.57 megabases, GC Content: 28.0%, Released Date: Sept. 15, 2008 #16750

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_011229
909.8 KB
820 CDS

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plasmid pl11
NC_011224
11.0 KB
8 CDS

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plasmid pl15
NC_011226
14.7 KB
13 CDS

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plasmid pl165
NC_011247
160.0 KB
134 CDS

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plasmid pl23
NC_011257
22.8 KB
21 CDS

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plasmid pl23b
NC_011259
22.5 KB
12 CDS

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plasmid pl26
NC_011261
26.3 KB
34 CDS

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plasmid pl27
NC_011265
26.8 KB
35 CDS

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plasmid pl28
NC_011245
27.7 KB
36 CDS

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plasmid pl31
NC_011262
30.3 KB
20 CDS

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plasmid pl32
NC_011264
30.9 KB
22 CDS

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plasmid pl35
NC_011248
34.5 KB
19 CDS

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plasmid pl36
NC_011249
35.0 KB
20 CDS

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plasmid pl40
NC_011250
39.4 KB
18 CDS

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plasmid pl41
NC_011251
40.3 KB
28 CDS

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plasmid pl42
NC_011254
41.2 KB
20 CDS

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plasmid pl70
NC_011256
64.9 KB
45 CDS

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References

The Genome of Borrelia recurrentis, the Agent of Deadly Louse-Borne Relapsing Fever, Is a Degraded Subset of Tick-Borne Borrelia duttonii
Lescot,M., Audic,S., Robert,C., Nguyen,T., Blanc,g., Cutler,S.J., Wincker,P., Couloux,A., Claverie,J.-M., Raoult,D. and Drancourt,M. PLoS Genet. 4 (9), E1000185 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Borrelia duttonii Ly

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Sequences

References

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