Borrelia hermsii DAH

Rocky Mountain Laboratories, NIAID, NIH

Genome Size: 1.0595 megabases, GC Content: 29.8%, Released Date: Dec. 22, 2006 #19787

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP000048
900.7 KB
819 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 1025rc
CP000274
8.7 KB
6 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 1029
CP000279
15.5 KB
6 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 1034rc
CP000275
14.4 KB
3 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 1046T
CP000273
11.7 KB
4 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 1047L
CP000276
21.4 KB
9 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 1047R
CP000277
16.5 KB
7 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 1050
CP000278
23.3 KB
13 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 1051L
CP000280
21.2 KB
4 CDS

Table view
Circular View
Artemis Viewer

plasmid fragment 983
CP000281
2.6 KB
1 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Borrelia hermsii DAH

Search Genome

Sequences

PubMed Search for Borrelia hermsii DAH

Related Genomes