Borrelia sp. SV1

J. Craig Venter Institute

Genome Size: 0.33 megabases, GC Content: 28.3%, Released Date: Feb. 6, 2008 #17840

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABJZ02000001
77.6 KB
59 CDS

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whole genome shotgun sequence
NZ_ABJZ02000002
175.8 KB
171 CDS

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whole genome shotgun sequence
NZ_ABJZ02000003
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABJZ02000004
4.1 KB
4 CDS

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whole genome shotgun sequence
NZ_ABJZ02000005
622.8 KB
606 CDS

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whole genome shotgun sequence
NZ_ABJZ02000006
46.6 KB
62 CDS

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whole genome shotgun sequence
NZ_ABJZ02000007
1.2 KB
1 CDS

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Taxonomy

External Links

Borrelia sp. SV1

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Sequences

PubMed Search for Borrelia sp. SV1

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