Brucella abortus S19

Virginia Bioinformatics Institute

Genome Size: 3.3 megabases, GC Content: 57.2%, Released Date: May 22, 2008 #16761

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

chromosome 1
NC_010742
2.0 MB
1967 CDS

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chromosome 2, complete genome
NC_010740
1.1 MB
1033 CDS

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References

Genome sequence of Brucella abortus vaccine strain S19 compared to virulent strains yields candidate virulence genes
Crasta,O.R., Folkerts,O., Fei,Z., Mane,S.P., Evans,C., Martino-Catt,S., Bricker,B., Yu,G., Du,L. and Sobral,B.W. PLoS ONE 3 (5), E2193 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Brucella abortus S19

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Sequences

References

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