Brucella abortus str. 2308 A

Virginia Bioinformatics Institute

GC Content: 57.2%, Released Date: May 19, 2009 #17850

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACOR01000001
1.0 MB
1020 CDS

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whole genome shotgun sequence
NZ_ACOR01000002
522.0 KB
517 CDS

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whole genome shotgun sequence
NZ_ACOR01000003
105.9 KB
116 CDS

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whole genome shotgun sequence
NZ_ACOR01000004
87.2 KB
83 CDS

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whole genome shotgun sequence
NZ_ACOR01000005
6.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ACOR01000006
304.8 KB
296 CDS

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whole genome shotgun sequence
NZ_ACOR01000007
1.0 MB
956 CDS

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whole genome shotgun sequence
NZ_ACOR01000008
18.6 KB
20 CDS

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whole genome shotgun sequence
NZ_ACOR01000009
77.7 KB
58 CDS

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Taxonomy

External Links

Brucella abortus str. 2308 A

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Sequences

PubMed Search for Brucella abortus str. 2308 A

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