Buchnera aphidicola str. APS (Acyrthosiphon pisum)

RIKEN, Japan

Genome Size: 0.66 megabases, GC Content: 26.4%, Released Date: Sept. 19, 2000 #16772

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_002528
625.7 KB
564 CDS

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plasmid pLeu
NC_002253
7.6 KB
7 CDS

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plasmid pTrp
NC_002252
7.1 KB
3 CDS

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References

Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
Shigenobu,S., Watanabe,H., Hattori,M., Sakaki,Y. and Ishikawa,H. Nature 407 (6800), 81-86 (2000)
PubMed, PubGet, HubMed

Taxonomy

External Links

Buchnera aphidicola str. APS (Acyrthosiphon pisum)

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Sequences

References

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