Buchnera aphidicola str. Cc (Cinara cedri)

University of Valencia

Genome Size: 0.42 megabases, GC Content: 20.2%, Released Date: Oct. 18, 2006 #16774

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_008513
406.6 KB
357 CDS

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Buchnera aphidicola (Cinara cedri) plasmid pLeu-BCc
NC_011878
5.9 KB
5 CDS

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Circular View
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References

A small microbial genome: the end of a long symbiotic relationship?
Perez-Brocal,V., Gil,R., Ramos,S., Lamelas,A., Postigo,M., Michelena,J.M., Silva,F.J., Moya,A. and Latorre,A. Science 314 (5797), 312-313 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Buchnera aphidicola str. Cc (Cinara cedri)

Search Genome

Sequences

References

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