Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)

International Aphid Genomics Consortium

GC Content: 26.3%, Released Date: March 2, 2009 #17868

incomplete

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Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

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Sequences

sequence, whole genome shotgun sequence
NZ_ACFK01000001
627.0 KB
594 CDS

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Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)

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Sequences

PubMed Search for Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)

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