Buchnera aphidicola str. Sg (Schizaphis graminum)

Uppsala Univ.

Genome Size: 0.64 megabases, GC Content: 25.3%, Released Date: June 29, 2002 #16775

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_004061
626.4 KB
546 CDS

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References

50 million years of genomic stasis in endosymbiotic bacteria
Tamas,I., Klasson,L., Canback,B., Naslund,A.K., Eriksson,A.S., Wernegreen,J.J., Sandstrom,J.P., Moran,N.A. and Andersson,S.G. Science 296 (5577), 2376-2379 (2002)
PubMed, PubGet, HubMed

Taxonomy

External Links

Buchnera aphidicola str. Sg (Schizaphis graminum)

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Sequences

References

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