Burkholderia glumae BGR1

Crop Functional Genomics Center , Seoul National University , Seoul National University, Department of Agricultural Biotechnology, Republic of Korea, Seoul

Genome Size: 7.24 megabases, GC Content: 67.9%, Released Date: May 22, 2009 #16783

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

chromosome 1, complete genome
NC_012724
3.7 MB
3287 CDS

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chromosome 2, complete genome
NC_012721
2.7 MB
2079 CDS

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plasmid bglu_1p
NC_012723
130.5 KB
102 CDS

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plasmid bglu_2p
NC_012718
138.5 KB
97 CDS

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plasmid bglu_3p
NC_012720
137.8 KB
106 CDS

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plasmid bglu_4p
NC_012725
131.2 KB
102 CDS

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References

Complete genome sequence of Burkholderia glumae BGR1
Lim,J., Lee,T.H., Nahm,B.H., Choi,Y.D., Kim,M. and Hwang,I. J. Bacteriol. 191 (11), 3758-3759 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Burkholderia glumae BGR1

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Sequences

References

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