Burkholderia graminis C4D1M

DOE Joint Genome Institute

GC Content: 62.9%, Released Date: March 17, 2008 #17871

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABLD01000001
658.1 KB
607 CDS

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whole genome shotgun sequence
NZ_ABLD01000002
611.2 KB
577 CDS

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whole genome shotgun sequence
NZ_ABLD01000003
516.1 KB
465 CDS

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whole genome shotgun sequence
NZ_ABLD01000004
495.3 KB
454 CDS

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whole genome shotgun sequence
NZ_ABLD01000005
433.4 KB
398 CDS

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whole genome shotgun sequence
NZ_ABLD01000006
396.6 KB
374 CDS

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whole genome shotgun sequence
NZ_ABLD01000007
301.9 KB
282 CDS

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whole genome shotgun sequence
NZ_ABLD01000008
206.1 KB
184 CDS

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whole genome shotgun sequence
NZ_ABLD01000009
191.8 KB
189 CDS

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whole genome shotgun sequence
NZ_ABLD01000010
189.5 KB
182 CDS

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whole genome shotgun sequence
NZ_ABLD01000011
188.3 KB
180 CDS

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whole genome shotgun sequence
NZ_ABLD01000012
174.6 KB
164 CDS

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whole genome shotgun sequence
NZ_ABLD01000013
162.9 KB
166 CDS

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whole genome shotgun sequence
NZ_ABLD01000014
162.9 KB
149 CDS

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whole genome shotgun sequence
NZ_ABLD01000015
159.2 KB
138 CDS

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whole genome shotgun sequence
NZ_ABLD01000016
155.0 KB
112 CDS

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whole genome shotgun sequence
NZ_ABLD01000017
151.3 KB
137 CDS

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whole genome shotgun sequence
NZ_ABLD01000018
140.9 KB
132 CDS

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whole genome shotgun sequence
NZ_ABLD01000019
138.3 KB
128 CDS

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whole genome shotgun sequence
NZ_ABLD01000020
130.8 KB
116 CDS

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whole genome shotgun sequence
NZ_ABLD01000021
124.8 KB
114 CDS

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whole genome shotgun sequence
NZ_ABLD01000022
109.9 KB
104 CDS

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whole genome shotgun sequence
NZ_ABLD01000023
109.7 KB
103 CDS

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whole genome shotgun sequence
NZ_ABLD01000024
102.2 KB
99 CDS

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whole genome shotgun sequence
NZ_ABLD01000025
101.3 KB
87 CDS

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whole genome shotgun sequence
NZ_ABLD01000026
94.6 KB
105 CDS

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whole genome shotgun sequence
NZ_ABLD01000027
80.2 KB
74 CDS

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whole genome shotgun sequence
NZ_ABLD01000028
60.6 KB
50 CDS

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whole genome shotgun sequence
NZ_ABLD01000029
57.6 KB
62 CDS

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whole genome shotgun sequence
NZ_ABLD01000030
48.0 KB
40 CDS

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whole genome shotgun sequence
NZ_ABLD01000031
47.5 KB
46 CDS

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whole genome shotgun sequence
NZ_ABLD01000032
47.4 KB
41 CDS

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whole genome shotgun sequence
NZ_ABLD01000033
46.4 KB
45 CDS

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whole genome shotgun sequence
NZ_ABLD01000034
45.8 KB
40 CDS

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whole genome shotgun sequence
NZ_ABLD01000035
43.5 KB
42 CDS

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whole genome shotgun sequence
NZ_ABLD01000036
41.8 KB
40 CDS

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whole genome shotgun sequence
NZ_ABLD01000037
41.6 KB
37 CDS

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whole genome shotgun sequence
NZ_ABLD01000038
40.2 KB
36 CDS

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whole genome shotgun sequence
NZ_ABLD01000039
37.0 KB
40 CDS

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whole genome shotgun sequence
NZ_ABLD01000040
30.8 KB
25 CDS

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whole genome shotgun sequence
NZ_ABLD01000041
30.2 KB
29 CDS

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whole genome shotgun sequence
NZ_ABLD01000042
28.0 KB
21 CDS

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whole genome shotgun sequence
NZ_ABLD01000043
27.8 KB
27 CDS

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whole genome shotgun sequence
NZ_ABLD01000044
27.5 KB
27 CDS

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whole genome shotgun sequence
NZ_ABLD01000045
27.2 KB
22 CDS

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whole genome shotgun sequence
NZ_ABLD01000046
27.1 KB
19 CDS

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whole genome shotgun sequence
NZ_ABLD01000047
25.6 KB
21 CDS

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whole genome shotgun sequence
NZ_ABLD01000048
24.0 KB
22 CDS

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whole genome shotgun sequence
NZ_ABLD01000049
22.7 KB
19 CDS

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whole genome shotgun sequence
NZ_ABLD01000050
22.6 KB
20 CDS

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whole genome shotgun sequence
NZ_ABLD01000051
22.3 KB
17 CDS

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whole genome shotgun sequence
NZ_ABLD01000052
21.8 KB
21 CDS

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whole genome shotgun sequence
NZ_ABLD01000053
21.7 KB
17 CDS

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whole genome shotgun sequence
NZ_ABLD01000054
13.6 KB
15 CDS

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whole genome shotgun sequence
NZ_ABLD01000055
10.8 KB
11 CDS

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whole genome shotgun sequence
NZ_ABLD01000056
10.5 KB
9 CDS

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whole genome shotgun sequence
NZ_ABLD01000057
10.4 KB
11 CDS

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whole genome shotgun sequence
NZ_ABLD01000058
8.8 KB
9 CDS

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whole genome shotgun sequence
NZ_ABLD01000059
7.9 KB
8 CDS

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whole genome shotgun sequence
NZ_ABLD01000060
7.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ABLD01000061
4.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ABLD01000062
3.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABLD01000063
3.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABLD01000064
3.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABLD01000065
3.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABLD01000066
2.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ABLD01000067
2.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABLD01000068
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABLD01000069
2.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABLD01000070
2.0 KB
2 CDS

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Taxonomy

External Links

Burkholderia graminis C4D1M

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Sequences

PubMed Search for Burkholderia graminis C4D1M

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