Burkholderia thailandensis E264

Genome Institute of Singapore

GC Content: 67.8%, Released Date: April 10, 2007 #17894

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AACX01000001
26.0 KB
24 CDS

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whole genome shotgun sequence
NZ_AACX01000002
4.5 KB
8 CDS

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whole genome shotgun sequence
NZ_AACX01000003
3.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AACX01000004
8.1 KB
6 CDS

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whole genome shotgun sequence
NZ_AACX01000005
136.0 KB
146 CDS

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whole genome shotgun sequence
NZ_AACX01000006
28.5 KB
28 CDS

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whole genome shotgun sequence
NZ_AACX01000007
403.3 KB
370 CDS

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whole genome shotgun sequence
NZ_AACX01000008
129.6 KB
132 CDS

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whole genome shotgun sequence
NZ_AACX01000009
79.9 KB
71 CDS

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whole genome shotgun sequence
NZ_AACX01000010
4.0 KB
6 CDS

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whole genome shotgun sequence
NZ_AACX01000011
30.0 KB
32 CDS

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whole genome shotgun sequence
NZ_AACX01000012
23.5 KB
25 CDS

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whole genome shotgun sequence
NZ_AACX01000013
121.0 KB
111 CDS

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whole genome shotgun sequence
NZ_AACX01000014
33.3 KB
26 CDS

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whole genome shotgun sequence
NZ_AACX01000015
154.0 KB
131 CDS

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whole genome shotgun sequence
NZ_AACX01000016
8.3 KB
9 CDS

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whole genome shotgun sequence
NZ_AACX01000017
373.0 KB
354 CDS

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whole genome shotgun sequence
NZ_AACX01000018
148.5 KB
105 CDS

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whole genome shotgun sequence
NZ_AACX01000019
24.2 KB
25 CDS

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whole genome shotgun sequence
NZ_AACX01000020
28.1 KB
30 CDS

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whole genome shotgun sequence
NZ_AACX01000021
45.0 KB
42 CDS

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whole genome shotgun sequence
NZ_AACX01000022
16.6 KB
16 CDS

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whole genome shotgun sequence
NZ_AACX01000023
42.0 KB
38 CDS

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whole genome shotgun sequence
NZ_AACX01000024
2.0 KB
1 CDS

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whole genome shotgun sequence
NZ_AACX01000025
360.6 KB
314 CDS

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whole genome shotgun sequence
NZ_AACX01000026
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_AACX01000027
236.1 KB
242 CDS

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whole genome shotgun sequence
NZ_AACX01000028
873.7 KB
808 CDS

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whole genome shotgun sequence
NZ_AACX01000029
22.1 KB
17 CDS

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whole genome shotgun sequence
NZ_AACX01000030
179.0 KB
140 CDS

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whole genome shotgun sequence
NZ_AACX01000031
810.2 KB
733 CDS

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whole genome shotgun sequence
NZ_AACX01000032
167.5 KB
171 CDS

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whole genome shotgun sequence
NZ_AACX01000033
189.5 KB
186 CDS

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whole genome shotgun sequence
NZ_AACX01000034
47.0 KB
43 CDS

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whole genome shotgun sequence
NZ_AACX01000035
397.2 KB
385 CDS

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whole genome shotgun sequence
NZ_AACX01000036
11.5 KB
11 CDS

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whole genome shotgun sequence
NZ_AACX01000037
20.4 KB
17 CDS

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whole genome shotgun sequence
NZ_AACX01000038
210.9 KB
159 CDS

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whole genome shotgun sequence
NZ_AACX01000039
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_AACX01000040
219.4 KB
221 CDS

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whole genome shotgun sequence
NZ_AACX01000041
47.7 KB
43 CDS

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whole genome shotgun sequence
NZ_AACX01000042
415.1 KB
363 CDS

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whole genome shotgun sequence
NZ_AACX01000043
32.1 KB
24 CDS

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whole genome shotgun sequence
NZ_AACX01000044
40.5 KB
35 CDS

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References

Genomic patterns of pathogen evolution revealed by comparison of Burkholderia pseudomallei, the causative agent of melioidosis, to avirulent Burkholderia thailandensis
Yu,Y., Kim,H.S., Chua,H.H., Lin,C.H., Sim,S.H., Lin,D., Derr,A., Engels,R., DeShazer,D., Birren,B., Nierman,W.C. and Tan,P. BMC Microbiol. 6, 46 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Burkholderia thailandensis E264

Search Genome

Sequences

References

Related Genomes