Burkholderia thailandensis E264

TIGR

Genome Size: 6.71 megabases, GC Content: 67.6%, Released Date: Dec. 15, 2005 #16797

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
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Allow mismatched bases

Sequences

chromosome I, complete genome
NC_007651
3.6 MB
3275 CDS

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chromosome II
NC_007650
2.8 MB
2358 CDS

Table view
Circular View
Artemis Viewer

References

Bacterial genome adaptation to niches: divergence of the potential virulence genes in three Burkholderia species of different survival strategies
Kim,H.S., Schell,M.A., Yu,Y., Ulrich,R.L., Sarria,S.H., Nierman,W.C. and DeShazer,D. BMC Genomics 6, 174 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Burkholderia thailandensis E264

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Sequences

References

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