Caminibacter mediatlanticus TB-2

J. Craig Venter Institute

GC Content: 27.1%, Released Date: June 19, 2007 #17899

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABCJ01000001
471.1 KB
527 CDS

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whole genome shotgun sequence
NZ_ABCJ01000002
219.1 KB
249 CDS

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whole genome shotgun sequence
NZ_ABCJ01000003
162.4 KB
180 CDS

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whole genome shotgun sequence
NZ_ABCJ01000004
122.8 KB
139 CDS

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whole genome shotgun sequence
NZ_ABCJ01000005
120.5 KB
123 CDS

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whole genome shotgun sequence
NZ_ABCJ01000006
118.5 KB
113 CDS

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whole genome shotgun sequence
NZ_ABCJ01000007
75.9 KB
93 CDS

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whole genome shotgun sequence
NZ_ABCJ01000008
56.5 KB
66 CDS

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whole genome shotgun sequence
NZ_ABCJ01000009
44.2 KB
51 CDS

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whole genome shotgun sequence
NZ_ABCJ01000010
37.3 KB
38 CDS

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whole genome shotgun sequence
NZ_ABCJ01000011
35.8 KB
38 CDS

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whole genome shotgun sequence
NZ_ABCJ01000012
35.2 KB
32 CDS

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whole genome shotgun sequence
NZ_ABCJ01000013
24.2 KB
26 CDS

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whole genome shotgun sequence
NZ_ABCJ01000014
14.4 KB
13 CDS

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whole genome shotgun sequence
NZ_ABCJ01000015
13.5 KB
26 CDS

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whole genome shotgun sequence
NZ_ABCJ01000016
10.7 KB
17 CDS

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whole genome shotgun sequence
NZ_ABCJ01000017
9.9 KB
18 CDS

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whole genome shotgun sequence
NZ_ABCJ01000018
9.2 KB
11 CDS

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whole genome shotgun sequence
NZ_ABCJ01000019
6.6 KB
9 CDS

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whole genome shotgun sequence
NZ_ABCJ01000020
4.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABCJ01000021
4.4 KB
14 CDS

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whole genome shotgun sequence
NZ_ABCJ01000022
4.2 KB
6 CDS

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whole genome shotgun sequence
NZ_ABCJ01000023
3.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABCJ01000024
2.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABCJ01000025
2.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABCJ01000026
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABCJ01000027
2.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABCJ01000028
1.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABCJ01000029
1.4 KB
0 CDS

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whole genome shotgun sequence
NZ_ABCJ01000030
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCJ01000031
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABCJ01000032
1.3 KB
5 CDS

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whole genome shotgun sequence
NZ_ABCJ01000033
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABCJ01000034
1.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABCJ01000035
1.2 KB
2 CDS

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Taxonomy

External Links

Caminibacter mediatlanticus TB-2

Search Genome

Sequences

PubMed Search for Caminibacter mediatlanticus TB-2

Related Genomes