Campylobacter coli RM2228

TIGR

Genome Size: 1.86 megabases, GC Content: 31.1%, Released Date: Jan. 4, 2005 #17900

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AAFL01000001
366.3 KB
377 CDS

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whole genome shotgun sequence
NZ_AAFL01000002
337.4 KB
365 CDS

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whole genome shotgun sequence
NZ_AAFL01000003
175.3 KB
191 CDS

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whole genome shotgun sequence
NZ_AAFL01000004
102.9 KB
108 CDS

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whole genome shotgun sequence
NZ_AAFL01000005
96.7 KB
112 CDS

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whole genome shotgun sequence
NZ_AAFL01000006
91.8 KB
118 CDS

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whole genome shotgun sequence
NZ_AAFL01000007
90.6 KB
89 CDS

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whole genome shotgun sequence
NZ_AAFL01000008
74.1 KB
77 CDS

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whole genome shotgun sequence
NZ_AAFL01000009
53.8 KB
42 CDS

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whole genome shotgun sequence
NZ_AAFL01000010
43.4 KB
43 CDS

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whole genome shotgun sequence
NZ_AAFL01000011
42.7 KB
39 CDS

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whole genome shotgun sequence
NZ_AAFL01000012
36.3 KB
52 CDS

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whole genome shotgun sequence
NZ_AAFL01000013
33.2 KB
34 CDS

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whole genome shotgun sequence
NZ_AAFL01000014
30.9 KB
36 CDS

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whole genome shotgun sequence
NZ_AAFL01000015
30.0 KB
39 CDS

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whole genome shotgun sequence
NZ_AAFL01000016
30.0 KB
30 CDS

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whole genome shotgun sequence
NZ_AAFL01000017
26.0 KB
30 CDS

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whole genome shotgun sequence
NZ_AAFL01000018
23.8 KB
30 CDS

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whole genome shotgun sequence
NZ_AAFL01000019
21.9 KB
17 CDS

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whole genome shotgun sequence
NZ_AAFL01000020
17.7 KB
14 CDS

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whole genome shotgun sequence
NZ_AAFL01000021
17.5 KB
25 CDS

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whole genome shotgun sequence
NZ_AAFL01000022
13.5 KB
15 CDS

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whole genome shotgun sequence
NZ_AAFL01000023
13.1 KB
20 CDS

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whole genome shotgun sequence
NZ_AAFL01000024
10.9 KB
9 CDS

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whole genome shotgun sequence
NZ_AAFL01000025
6.2 KB
6 CDS

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whole genome shotgun sequence
NZ_AAFL01000026
5.3 KB
7 CDS

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whole genome shotgun sequence
NZ_AAFL01000027
5.0 KB
9 CDS

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whole genome shotgun sequence
NZ_AAFL01000028
4.7 KB
5 CDS

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whole genome shotgun sequence
NZ_AAFL01000029
3.0 KB
7 CDS

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whole genome shotgun sequence
NZ_AAFL01000030
2.1 KB
5 CDS

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whole genome shotgun sequence
NZ_AAFL01000031
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAFL01000032
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AAFL01000033
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AAFL01000034
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_AAFL01000035
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AAFL01000036
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AAFL01000037
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_AAFL01000038
898 bytes
1 CDS

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Taxonomy

External Links

Campylobacter coli RM2228

Search Genome

Sequences

PubMed Search for Campylobacter coli RM2228

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