Campylobacter jejuni subsp. jejuni 81-176

Yale Univ.

GC Content: 30.6%, Released Date: July 20, 2006 #17904

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AASL01000001
1.5 MB
1568 CDS

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References

Unique features of a highly pathogenic Campylobacter jejuni strain
Hofreuter,D., Tsai,J., Watson,R.O., Novik,V., Altman,B., Benitez,M., Clark,C., Perbost,C., Jarvie,T., Du,L. and Galan,J.E. Infect. Immun. 74 (8), 4694-4707 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Campylobacter jejuni subsp. jejuni 81-176

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Sequences

References

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