Campylobacter jejuni subsp. jejuni 81116

BBSRC Institute of Food Research

Genome Size: 1.6 megabases, GC Content: 30.5%, Released Date: Sept. 20, 2007 #16809

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_009839
1.6 MB
1626 CDS

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References

The complete genome sequence of Campylobacter jejuni strain 81116 (NCTC11828)
Pearson,B.M., Gaskin,D.J., Segers,R.P., Wells,J.M., Nuijten,P.J. and van Vliet,A.H. J. Bacteriol. 189 (22), 8402-8403 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

Campylobacter jejuni subsp. jejuni 81116

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Sequences

References

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