Campylobacter jejuni subsp. jejuni BH-01-0142

Naval Medical Research Center

GC Content: 27.7%, Released Date: Sept. 12, 2008 #17906

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABKD01000001
15.9 KB
19 CDS

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whole genome shotgun sequence
NZ_ABKD01000002
9.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABKD01000003
7.9 KB
6 CDS

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whole genome shotgun sequence
NZ_ABKD01000004
6.9 KB
4 CDS

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whole genome shotgun sequence
NZ_ABKD01000005
6.7 KB
7 CDS

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whole genome shotgun sequence
NZ_ABKD01000006
6.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKD01000007
5.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABKD01000008
5.6 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKD01000009
5.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABKD01000010
4.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000011
3.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000012
2.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000013
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000014
2.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKD01000015
2.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000016
1.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKD01000017
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000018
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000019
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000020
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000021
1.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000022
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000023
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABKD01000024
1.1 KB
0 CDS

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whole genome shotgun sequence
NZ_ABKD01000025
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000026
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000027
1012 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000028
996 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000029
978 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000030
951 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000031
901 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABKD01000032
807 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000033
731 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKD01000034
658 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000035
649 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000036
622 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000037
621 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000038
534 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000039
480 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKD01000040
423 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000041
378 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKD01000042
369 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000043
369 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000044
363 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000045
345 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000046
318 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000047
303 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKD01000048
297 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000049
285 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000050
273 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000051
273 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABKD01000052
273 bytes
0 CDS

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whole genome shotgun sequence
NZ_ABKD01000053
231 bytes
1 CDS

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References

Characterization of two Campylobacter jejuni strains for use in volunteer experimental-infection studies
Poly,F., Read,T.D., Chen,Y.H., Monteiro,M.A., Serichantalergs,O., Pootong,P., Bodhidatta,L., Mason,C.J., Rockabrand,D., Baqar,S., Porter,C.K., Tribble,D., Darsley,M. and Guerry,P. Infect. Immun. 76 (12), 5655-5667 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Campylobacter jejuni subsp. jejuni BH-01-0142

Search Genome

Sequences

References

Related Genomes