Campylobacter jejuni subsp. jejuni CG8421

Naval Medical Research Center

GC Content: 30.4%, Released Date: Sept. 19, 2008 #17908

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABGQ01000001
280.1 KB
264 CDS

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whole genome shotgun sequence
NZ_ABGQ01000002
185.9 KB
191 CDS

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whole genome shotgun sequence
NZ_ABGQ01000003
160.1 KB
150 CDS

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whole genome shotgun sequence
NZ_ABGQ01000004
147.6 KB
158 CDS

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whole genome shotgun sequence
NZ_ABGQ01000005
128.0 KB
121 CDS

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whole genome shotgun sequence
NZ_ABGQ01000006
125.1 KB
115 CDS

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whole genome shotgun sequence
NZ_ABGQ01000007
109.4 KB
103 CDS

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whole genome shotgun sequence
NZ_ABGQ01000008
101.8 KB
93 CDS

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whole genome shotgun sequence
NZ_ABGQ01000009
87.3 KB
87 CDS

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whole genome shotgun sequence
NZ_ABGQ01000010
68.7 KB
59 CDS

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whole genome shotgun sequence
NZ_ABGQ01000011
63.5 KB
58 CDS

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whole genome shotgun sequence
NZ_ABGQ01000012
41.9 KB
39 CDS

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whole genome shotgun sequence
NZ_ABGQ01000013
29.9 KB
31 CDS

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whole genome shotgun sequence
NZ_ABGQ01000014
12.6 KB
13 CDS

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whole genome shotgun sequence
NZ_ABGQ01000015
11.4 KB
14 CDS

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whole genome shotgun sequence
NZ_ABGQ01000016
6.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ABGQ01000017
4.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGQ01000018
3.9 KB
3 CDS

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whole genome shotgun sequence
NZ_ABGQ01000019
2.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABGQ01000020
1.3 KB
2 CDS

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References

Characterization of two Campylobacter jejuni strains for use in volunteer experimental-infection studies
Poly,F., Read,T.D., Chen,Y.H., Monteiro,M.A., Serichantalergs,O., Pootong,P., Bodhidatta,L., Mason,C.J., Rockabrand,D., Baqar,S., Porter,C.K., Tribble,D., Darsley,M. and Guerry,P. Infect. Immun. 76 (12), 5655-5667 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Campylobacter jejuni subsp. jejuni CG8421

Search Genome

Sequences

References

Related Genomes