Campylobacter jejuni subsp. jejuni DFVF1099

Faculty of Life Sciences, Department of Food Science, University of Copenhagen

#20207

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

gcj1099.assembly.10, whole genome shotgun sequence
ADHK01000001
41.0 KB
35 CDS

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gcj1099.assembly.11, whole genome shotgun sequence
ADHK01000002
30.6 KB
35 CDS

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gcj1099.assembly.12, whole genome shotgun sequence
ADHK01000003
20.3 KB
23 CDS

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gcj1099.assembly.13, whole genome shotgun sequence
ADHK01000004
43.6 KB
53 CDS

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gcj1099.assembly.14, whole genome shotgun sequence
ADHK01000005
63.4 KB
76 CDS

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gcj1099.assembly.15, whole genome shotgun sequence
ADHK01000006
61.0 KB
69 CDS

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gcj1099.assembly.16, whole genome shotgun sequence
ADHK01000007
40.0 KB
52 CDS

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gcj1099.assembly.17, whole genome shotgun sequence
ADHK01000008
88.9 KB
94 CDS

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gcj1099.assembly.18, whole genome shotgun sequence
ADHK01000009
17.1 KB
22 CDS

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gcj1099.assembly.19, whole genome shotgun sequence
ADHK01000010
17.1 KB
20 CDS

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gcj1099.assembly.1, whole genome shotgun sequence
ADHK01000011
65.8 KB
67 CDS

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gcj1099.assembly.20, whole genome shotgun sequence
ADHK01000012
21.0 KB
23 CDS

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gcj1099.assembly.21, whole genome shotgun sequence
ADHK01000013
17.6 KB
24 CDS

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gcj1099.assembly.22, whole genome shotgun sequence
ADHK01000014
44.8 KB
51 CDS

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gcj1099.assembly.23, whole genome shotgun sequence
ADHK01000015
36.8 KB
49 CDS

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gcj1099.assembly.24, whole genome shotgun sequence
ADHK01000016
27.9 KB
36 CDS

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gcj1099.assembly.25, whole genome shotgun sequence
ADHK01000017
10.2 KB
14 CDS

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gcj1099.assembly.26, whole genome shotgun sequence
ADHK01000018
14.3 KB
15 CDS

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gcj1099.assembly.27, whole genome shotgun sequence
ADHK01000019
6.2 KB
8 CDS

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gcj1099.assembly.28, whole genome shotgun sequence
ADHK01000020
103.5 KB
120 CDS

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gcj1099.assembly.29, whole genome shotgun sequence
ADHK01000021
6.5 KB
6 CDS

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gcj1099.assembly.2, whole genome shotgun sequence
ADHK01000022
53.6 KB
54 CDS

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gcj1099.assembly.30, whole genome shotgun sequence
ADHK01000023
4.9 KB
0 CDS

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gcj1099.assembly.31, whole genome shotgun sequence
ADHK01000024
3.9 KB
5 CDS

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gcj1099.assembly.32, whole genome shotgun sequence
ADHK01000025
2.2 KB
2 CDS

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gcj1099.assembly.33, whole genome shotgun sequence
ADHK01000026
2.0 KB
3 CDS

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gcj1099.assembly.34, whole genome shotgun sequence
ADHK01000027
107.8 KB
118 CDS

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gcj1099.assembly.35, whole genome shotgun sequence
ADHK01000028
262 bytes
0 CDS

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gcj1099.assembly.36, whole genome shotgun sequence
ADHK01000029
954 bytes
1 CDS

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gcj1099.assembly.37, whole genome shotgun sequence
ADHK01000030
3.8 KB
3 CDS

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gcj1099.assembly.38, whole genome shotgun sequence
ADHK01000031
221 bytes
0 CDS

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gcj1099.assembly.39, whole genome shotgun sequence
ADHK01000032
3.4 KB
5 CDS

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gcj1099.assembly.3, whole genome shotgun sequence
ADHK01000033
79.1 KB
87 CDS

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gcj1099.assembly.40, whole genome shotgun sequence
ADHK01000034
38.0 KB
38 CDS

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gcj1099.assembly.41, whole genome shotgun sequence
ADHK01000035
941 bytes
1 CDS

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gcj1099.assembly.42, whole genome shotgun sequence
ADHK01000036
3.4 KB
3 CDS

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gcj1099.assembly.43, whole genome shotgun sequence
ADHK01000037
2.0 KB
3 CDS

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gcj1099.assembly.44, whole genome shotgun sequence
ADHK01000038
2.0 KB
2 CDS

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gcj1099.assembly.45, whole genome shotgun sequence
ADHK01000039
54.8 KB
71 CDS

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gcj1099.assembly.46, whole genome shotgun sequence
ADHK01000040
84.3 KB
105 CDS

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gcj1099.assembly.47, whole genome shotgun sequence
ADHK01000041
658 bytes
2 CDS

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gcj1099.assembly.48, whole genome shotgun sequence
ADHK01000042
2.4 KB
2 CDS

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gcj1099.assembly.49, whole genome shotgun sequence
ADHK01000043
658 bytes
2 CDS

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gcj1099.assembly.4, whole genome shotgun sequence
ADHK01000044
46.9 KB
50 CDS

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gcj1099.assembly.50, whole genome shotgun sequence
ADHK01000045
1.1 KB
2 CDS

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gcj1099.assembly.51, whole genome shotgun sequence
ADHK01000046
787 bytes
2 CDS

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gcj1099.assembly.52, whole genome shotgun sequence
ADHK01000047
108 bytes
0 CDS

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gcj1099.assembly.53, whole genome shotgun sequence
ADHK01000048
1.5 KB
2 CDS

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gcj1099.assembly.54, whole genome shotgun sequence
ADHK01000049
2.4 KB
4 CDS

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gcj1099.assembly.55, whole genome shotgun sequence
ADHK01000050
286 bytes
1 CDS

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gcj1099.assembly.56, whole genome shotgun sequence
ADHK01000051
50.3 KB
60 CDS

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gcj1099.assembly.57, whole genome shotgun sequence
ADHK01000052
1.2 KB
3 CDS

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gcj1099.assembly.58, whole genome shotgun sequence
ADHK01000053
601 bytes
1 CDS

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gcj1099.assembly.59, whole genome shotgun sequence
ADHK01000054
930 bytes
2 CDS

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gcj1099.assembly.5, whole genome shotgun sequence
ADHK01000055
33.0 KB
32 CDS

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gcj1099.assembly.60, whole genome shotgun sequence
ADHK01000056
513 bytes
2 CDS

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gcj1099.assembly.61, whole genome shotgun sequence
ADHK01000057
643 bytes
2 CDS

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gcj1099.assembly.62, whole genome shotgun sequence
ADHK01000058
2.0 KB
4 CDS

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gcj1099.assembly.63, whole genome shotgun sequence
ADHK01000059
546 bytes
2 CDS

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gcj1099.assembly.64, whole genome shotgun sequence
ADHK01000060
807 bytes
3 CDS

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gcj1099.assembly.65, whole genome shotgun sequence
ADHK01000061
505 bytes
2 CDS

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gcj1099.assembly.66, whole genome shotgun sequence
ADHK01000062
855 bytes
1 CDS

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gcj1099.assembly.67, whole genome shotgun sequence
ADHK01000063
95.9 KB
107 CDS

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gcj1099.assembly.68, whole genome shotgun sequence
ADHK01000064
2.1 KB
4 CDS

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gcj1099.assembly.69, whole genome shotgun sequence
ADHK01000065
1.3 KB
2 CDS

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gcj1099.assembly.6, whole genome shotgun sequence
ADHK01000066
8.7 KB
9 CDS

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gcj1099.assembly.70, whole genome shotgun sequence
ADHK01000067
11.6 KB
15 CDS

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gcj1099.assembly.71, whole genome shotgun sequence
ADHK01000068
49.7 KB
57 CDS

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gcj1099.assembly.7, whole genome shotgun sequence
ADHK01000069
38.9 KB
50 CDS

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gcj1099.assembly.8, whole genome shotgun sequence
ADHK01000070
74.9 KB
86 CDS

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gcj1099.assembly.9, whole genome shotgun sequence
ADHK01000071
36.3 KB
45 CDS

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Taxonomy

External Links

Campylobacter jejuni subsp. jejuni DFVF1099

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Sequences

PubMed Search for Campylobacter jejuni subsp. jejuni DFVF1099

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