Campylobacter jejuni subsp. jejuni IA3902

View alignment of region with nucmer promer

Design primers within region using Primer3Plus

View region in Artemis

Retrieve virD4 nucleotide sequence in FASTA format

Retrieve virD4 protein sequence in FASTA format

Retrieve CJSA_pVir0007 nucleotide sequence with 10 50 100 200 400 600 800 1000 2000 bp. flanking sequence
Include translation of coding sequence
Include complementary strand.

Run NCBI BLASTP PSI-BLAST against the Non-redundant protein sequences (nr) SwissProt Protein Data Bank (PDB) database using CJSA_pVir0007 protein sequence
(optional - restrict search to taxonomic group: root cellular organisms Bacteria Proteobacteria delta/epsilon subdivisions Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni Campylobacter jejuni subsp. jejuni )

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