Campylobacter jejuni subsp. jejuni ICDCCJ07001

Dept. of Diagnosis for Infectious Disease

Genome Size: 1.74 megabases, Released Date: Dec. 14, 2010 #19805

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002029
1.6 MB
1494 CDS

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plasmid pTet
CP002030
43.1 KB
37 CDS

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References

Genomic Characterization of the Guillain-Barre Syndrome-Associated Campylobacter jejuni ICDCCJ07001 Isolate
Zhang,M., He,L., Li,Q., Sun,H., Gu,Y., You,Y., Meng,F. and Zhang,J. PLoS ONE 5 (11), E15060 (2010)
PubMed, PubGet, HubMed
Association study between an outbreak of Guillain-Barre syndrome in Jilin, China, and preceding Campylobacter jejuni infection
Zhang,M., Li,Q., He,L., Meng,F., Gu,Y., Zheng,M., Gong,Y., Wang,P., Ruan,F., Zhou,L., Wu,J., Chen,L., Fitzgerald,C. and Zhang,J. Foodborne Pathog. Dis. 7 (8), 913-919 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Campylobacter jejuni subsp. jejuni ICDCCJ07001

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Sequences

References

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