Campylobacter jejuni subsp. jejuni NCTC 11168

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Genome Size: 1.6 megabases, GC Content: 30.5%, Released Date: Feb. 25, 2000 #16810

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_002163
1.6 MB
1623 CDS

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References

Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence
Gundogdu,O., Bentley,S.D., Holden,M.T., Parkhill,J., Dorrell,N. and Wren,B.W. BMC Genomics 8, 162 (2007)
PubMed, PubGet, HubMed
The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences
Parkhill,J., Wren,B.W., Mungall,K., Ketley,J.M., Churcher,C., Basham,D., Chillingworth,T., Davies,R.M., Feltwell,T., Holroyd,S., Jagels,K., Karlyshev,A.V., Moule,S., Pallen,M.J., Penn,C.W., Quail,M.A., Rajandream,M.A., Rutherford,K.M., van Vliet,A.H., Whitehead,S. and Barrell,B.G. Nature 403 (6770), 665-668 (2000)
PubMed, PubGet, HubMed

Taxonomy

External Links

Campylobacter jejuni subsp. jejuni NCTC 11168

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Sequences

References

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