Campylobacter showae RM3277

J. Craig Venter Institute

Genome Size: 1.8 megabases, Released Date: Aug. 5, 2009 #17912

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACVQ01000001
21.0 KB
32 CDS

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whole genome shotgun sequence
NZ_ACVQ01000002
3.8 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVQ01000003
113.2 KB
130 CDS

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whole genome shotgun sequence
NZ_ACVQ01000004
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVQ01000005
143.7 KB
161 CDS

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whole genome shotgun sequence
NZ_ACVQ01000006
33.5 KB
45 CDS

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whole genome shotgun sequence
NZ_ACVQ01000007
799 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVQ01000008
77.5 KB
117 CDS

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whole genome shotgun sequence
NZ_ACVQ01000009
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVQ01000010
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVQ01000011
604 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVQ01000012
1.7 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVQ01000013
189.9 KB
235 CDS

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whole genome shotgun sequence
NZ_ACVQ01000014
541 bytes
1 CDS

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whole genome shotgun sequence
NZ_ACVQ01000015
54.3 KB
50 CDS

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whole genome shotgun sequence
NZ_ACVQ01000016
58.3 KB
63 CDS

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whole genome shotgun sequence
NZ_ACVQ01000017
241.3 KB
260 CDS

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whole genome shotgun sequence
NZ_ACVQ01000018
176.7 KB
203 CDS

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whole genome shotgun sequence
NZ_ACVQ01000019
116.1 KB
142 CDS

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whole genome shotgun sequence
NZ_ACVQ01000020
2.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ACVQ01000021
65.0 KB
69 CDS

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whole genome shotgun sequence
NZ_ACVQ01000022
62.8 KB
60 CDS

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whole genome shotgun sequence
NZ_ACVQ01000023
32.8 KB
37 CDS

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whole genome shotgun sequence
NZ_ACVQ01000024
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVQ01000025
7.1 KB
7 CDS

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whole genome shotgun sequence
NZ_ACVQ01000026
831 bytes
3 CDS

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whole genome shotgun sequence
NZ_ACVQ01000027
150.3 KB
183 CDS

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whole genome shotgun sequence
NZ_ACVQ01000028
134.7 KB
154 CDS

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whole genome shotgun sequence
NZ_ACVQ01000029
55.8 KB
75 CDS

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whole genome shotgun sequence
NZ_ACVQ01000030
1.7 KB
0 CDS

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whole genome shotgun sequence
NZ_ACVQ01000031
2.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ACVQ01000032
137.7 KB
172 CDS

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whole genome shotgun sequence
NZ_ACVQ01000033
132.6 KB
149 CDS

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Taxonomy

External Links

Campylobacter showae RM3277

Search Genome

Sequences

PubMed Search for Campylobacter showae RM3277

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