candidate division TM7 single-cell isolate TM7c

DOE Joint Genome Institute

GC Content: 39.1%, Released Date: June 8, 2007 #18580

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABBX01000001
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000002
789 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000003
948 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000004
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000005
12.0 KB
15 CDS

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whole genome shotgun sequence
NZ_ABBX01000006
14.5 KB
18 CDS

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whole genome shotgun sequence
NZ_ABBX01000007
833 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000008
1.2 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000009
1.8 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000010
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000011
942 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000012
813 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000013
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000014
13.8 KB
17 CDS

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whole genome shotgun sequence
NZ_ABBX01000015
2.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000016
1006 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000017
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000018
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000019
2.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000020
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000021
4.8 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000022
35.0 KB
34 CDS

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whole genome shotgun sequence
NZ_ABBX01000023
7.9 KB
9 CDS

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whole genome shotgun sequence
NZ_ABBX01000024
3.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000025
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000026
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000027
820 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000028
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000029
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000030
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000031
4.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000032
2.2 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000033
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000034
2.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000035
982 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000036
5.8 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000037
798 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000038
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000039
2.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000040
10.4 KB
12 CDS

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whole genome shotgun sequence
NZ_ABBX01000041
993 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000042
2.0 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000043
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000044
2.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000045
820 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000046
15.4 KB
20 CDS

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whole genome shotgun sequence
NZ_ABBX01000047
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000048
3.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000049
1010 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000050
798 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000051
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000052
1.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000053
8.6 KB
7 CDS

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whole genome shotgun sequence
NZ_ABBX01000054
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000055
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000056
3.6 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000057
1.4 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000058
4.2 KB
7 CDS

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whole genome shotgun sequence
NZ_ABBX01000059
2.5 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000060
6.0 KB
10 CDS

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whole genome shotgun sequence
NZ_ABBX01000061
4.0 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000062
3.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000063
3.1 KB
6 CDS

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whole genome shotgun sequence
NZ_ABBX01000064
7.8 KB
8 CDS

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whole genome shotgun sequence
NZ_ABBX01000065
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000066
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000067
869 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000068
5.3 KB
9 CDS

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whole genome shotgun sequence
NZ_ABBX01000069
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000070
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000071
4.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000072
12.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ABBX01000073
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000074
2.7 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000075
1.0 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000076
4.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000077
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000078
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000079
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000080
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000081
9.5 KB
9 CDS

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whole genome shotgun sequence
NZ_ABBX01000082
1.9 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000083
2.4 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000084
2.7 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000085
892 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000086
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000087
1.5 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000088
1.6 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000089
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000090
1.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000091
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000092
915 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000093
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000094
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000095
12.5 KB
16 CDS

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whole genome shotgun sequence
NZ_ABBX01000096
1.5 KB
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000097
1.8 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000098
852 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000099
910 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000100
4.0 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000101
785 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000102
2.5 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000103
1.2 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000104
890 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000105
783 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000106
1.6 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000107
871 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000108
966 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000109
1.2 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000110
1.4 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000111
954 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000112
7.3 KB
11 CDS

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whole genome shotgun sequence
NZ_ABBX01000113
986 bytes
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000114
805 bytes
1 CDS

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whole genome shotgun sequence
NZ_ABBX01000115
1.0 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000116
1.1 KB
3 CDS

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whole genome shotgun sequence
NZ_ABBX01000117
7.5 KB
11 CDS

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whole genome shotgun sequence
NZ_ABBX01000118
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000119
1.6 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000120
13.6 KB
17 CDS

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whole genome shotgun sequence
NZ_ABBX01000121
4.0 KB
7 CDS

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whole genome shotgun sequence
NZ_ABBX01000122
5.6 KB
6 CDS

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whole genome shotgun sequence
NZ_ABBX01000123
8.9 KB
10 CDS

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whole genome shotgun sequence
NZ_ABBX01000124
2.3 KB
4 CDS

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whole genome shotgun sequence
NZ_ABBX01000125
2.1 KB
5 CDS

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whole genome shotgun sequence
NZ_ABBX01000126
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000127
59.8 KB
54 CDS

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whole genome shotgun sequence
NZ_ABBX01000128
755 bytes
2 CDS

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whole genome shotgun sequence
NZ_ABBX01000129
768 bytes
2 CDS

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References

Dissecting biological 'dark matter' with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
Marcy,Y., Ouverney,C., Bik,E.M., Losekann,T., Ivanova,N., Martin,H.G., Szeto,E., Platt,D., Hugenholtz,P., Relman,D.A. and Quake,S.R. Proc. Natl. Acad. Sci. U.S.A. 104 (29), 11889-11894 (2007)
PubMed, PubGet, HubMed

Taxonomy

External Links

candidate division TM7 single-cell isolate TM7c

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Sequences

References

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