Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2

RIKEN, Japan

Genome Size: 1.21 megabases, GC Content: 32.9%, Released Date: Nov. 12, 2008 #16814

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_011565
1.1 MB
758 CDS

Table view
Circular View
Artemis Viewer

plasmid pCFPG1
NC_011564
36.7 KB
37 CDS

Table view
Circular View
Artemis Viewer

plasmid pCFPG2
NC_011561
36.2 KB
28 CDS

Table view
Circular View
Artemis Viewer

plasmid pCFPG3
NC_011562
31.1 KB
25 CDS

Table view
Circular View
Artemis Viewer

plasmid pCFPG4
NC_011563
4.1 KB
4 CDS

Table view
Circular View
Artemis Viewer

References

Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut
Hongoh,Y., Sharma,V.K., Prakash,T., Noda,S., Toh,H., Taylor,T.D., Kudo,T., Sakaki,Y., Toyoda,A., Hattori,M. and Ohkuma,M. Science 322 (5904), 1108-1109 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2

Search Genome

Sequences

References

Related Genomes