Candidatus Korarchaeum cryptofilum OPF8

DOE Joint Genome Institute

Genome Size: 1.6 megabases, GC Content: 49.0%, Released Date: March 18, 2008 #16821

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_010482
1.5 MB
1602 CDS

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References

A korarchaeal genome reveals insights into the evolution of the Archaea
Elkins,J.G., Podar,M., Graham,D.E., Makarova,K.S., Wolf,Y., Randau,L., Hedlund,B.P., Brochier-Armanet,C., Kunin,V., Anderson,I., Lapidus,A., Goltsman,E., Barry,K., Koonin,E.V., Hugenholtz,P., Kyrpides,N., Wanner,G., Richardson,P., Keller,M. and Stetter,K.O. Proc. Natl. Acad. Sci. U.S.A. 105 (23), 8102-8107 (2008)
PubMed, PubGet, HubMed

Taxonomy

External Links

Candidatus Korarchaeum cryptofilum OPF8

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Sequences

References

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