Candidatus Nitrospira defluvii

Genoscope

Genome Size: 4.3 megabases, Released Date: July 14, 2010 #19809

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

chromosome, complete genome
FP929003
4.1 MB
4271 CDS

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References

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
Lucker,S., Wagner,M., Maixner,F., Pelletier,E., Koch,H., Vacherie,B., Rattei,T., Sinninghe Damste,J., Spieck,E., Le Paslier,D. and Daims,H. Proc. Natl. Acad. Sci. U.S.A. 107 (30), 13479-13484 (2010)
PubMed, PubGet, HubMed

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Thermodesulfovibrio yellowstonii DSM 11347

Taxonomy

External Links

Candidatus Nitrospira defluvii

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Sequences

References

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