Candidatus Phytoplasma australiense

Max Planck Institute

Genome Size: 0.88 megabases, GC Content: 27.4%, Released Date: April 2, 2008 #16826

 Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region:   bp. upstream of a gene 
Leave blank for no restriction.

Report matches:  in any location within intergenic regions only overlapping genes only  

Allow  1 2 3 4 5 6 7 8 9  mismatched bases 

Sequences

References

• Comparative genome analysis of 'Candidatus Phytoplasma australiense' (subgroup tuf-Australia I; rp-A) and 'Ca. Phytoplasma asteris' Strains OY-M and AY-WB
  Tran-Nguyen,L.T., Kube,M., Schneider,B., Reinhardt,R. and Gibb,K.S. J. Bacteriol. 190 (11), 3979-3991 (2008)
  PubMed, PubGet, HubMed

Related Genomes

• Aster yellows witches'-broom phytoplasma AYWB
• Candidatus Phytoplasma mali
• Onion yellows phytoplasma OY-M
• Mycoplasma mycoides subsp. capri str. GM12 (tetM-lacZ clone)
• Mycoplasma mycoides subsp. capri str. GM12 (deltatypeIIIres clone)
• Acholeplasma laidlawii PG-8A
• Mesoplasma florum L1
• Mycoplasma agalactiae PG2
• Mycoplasma arthritidis 158L3-1
• Mycoplasma capricolum subsp. capricolum ATCC 27343
• Mycoplasma conjunctivae HRC/581
• Mycoplasma gallisepticum str. R(low)
• Mycoplasma genitalium G37
• Mycoplasma hominis
• Mycoplasma hyopneumoniae 232
• Mycoplasma hyopneumoniae 7448
• Mycoplasma hyopneumoniae J
• Mycoplasma mobile 163K
• Mycoplasma mycoides subsp. mycoides SC str. PG1
• Mycoplasma penetrans HF-2
• Mycoplasma pneumoniae M129
• Mycoplasma pulmonis UAB CTIP
• Mycoplasma synoviae 53
• Ureaplasma parvum serovar 3 str. ATCC 27815
• Ureaplasma parvum serovar 3 str. ATCC 700970
• Ureaplasma urealyticum serovar 10 str. ATCC 33699
• Mycoplasma gallisepticum str. F
• Mycoplasma gallisepticum str. R(high)
• Mycoplasma genitalium G37
• Ureaplasma parvum serovar 1 str. ATCC 27813
• Ureaplasma parvum serovar 14 str. ATCC 33697
• Ureaplasma parvum serovar 6 str. ATCC 27818
• Ureaplasma urealyticum serovar 11 str. ATCC 33695
• Ureaplasma urealyticum serovar 12 str. ATCC 33696
• Ureaplasma urealyticum serovar 13 str. ATCC 33698
• Ureaplasma urealyticum serovar 2 str. ATCC 27814
• Ureaplasma urealyticum serovar 4 str. ATCC 27816
• Ureaplasma urealyticum serovar 5 str. ATCC 27817
• Ureaplasma urealyticum serovar 7 str. ATCC 27819
• Ureaplasma urealyticum serovar 8 str. ATCC 27618
• Ureaplasma urealyticum serovar 9 str. ATCC 33175
• Mycoplasma bovis PG45
• Mycoplasma crocodyli MP145
• Mycoplasma fermentans JER
• Mycoplasma fermentans PG18
• Mycoplasma hyopneumoniae 168
• Mycoplasma hyorhinis HUB-1
• Mycoplasma leachii PG50
• Mycoplasma mycoides subsp. mycoides SC str. Gladysdale
• Mycoplasma pneumoniae FH
• Mycoplasma alligatoris A21JP2
• Mycoplasma suis str. Illinois