Candidatus Protochlamydia amoebophila UWE25

University of Vienna, Austria

Genome Size: 2.41 megabases, GC Content: 34.7%, Released Date: April 10, 2004 #16828

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_005861
2.3 MB
2031 CDS

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References

Illuminating the evolutionary history of chlamydiae
Horn,M., Collingro,A., Schmitz-Esser,S., Beier,C.L., Purkhold,U., Fartmann,B., Brandt,P., Nyakatura,G.J., Droege,M., Frishman,D., Rattei,T., Mewes,H.W. and Wagner,M. Science 304 (5671), 728-730 (2004)
PubMed, PubGet, HubMed

Taxonomy

External Links

Candidatus Protochlamydia amoebophila UWE25

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Sequences

References

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