Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)

TIGR

GC Content: 24.1%, Released Date: May 1, 2006 #17915

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_AANL01000001
13.9 KB
25 CDS

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whole genome shotgun sequence
NZ_AANL01000002
8.6 KB
6 CDS

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whole genome shotgun sequence
NZ_AANL01000003
7.2 KB
8 CDS

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whole genome shotgun sequence
NZ_AANL01000004
6.9 KB
5 CDS

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whole genome shotgun sequence
NZ_AANL01000005
6.4 KB
7 CDS

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whole genome shotgun sequence
NZ_AANL01000006
5.3 KB
5 CDS

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whole genome shotgun sequence
NZ_AANL01000007
5.1 KB
6 CDS

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whole genome shotgun sequence
NZ_AANL01000008
4.4 KB
6 CDS

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whole genome shotgun sequence
NZ_AANL01000009
4.2 KB
5 CDS

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whole genome shotgun sequence
NZ_AANL01000010
4.0 KB
5 CDS

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whole genome shotgun sequence
NZ_AANL01000011
3.9 KB
5 CDS

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whole genome shotgun sequence
NZ_AANL01000012
3.9 KB
3 CDS

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whole genome shotgun sequence
NZ_AANL01000013
3.7 KB
4 CDS

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whole genome shotgun sequence
NZ_AANL01000014
3.6 KB
3 CDS

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whole genome shotgun sequence
NZ_AANL01000015
3.6 KB
5 CDS

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whole genome shotgun sequence
NZ_AANL01000016
3.5 KB
4 CDS

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whole genome shotgun sequence
NZ_AANL01000017
3.4 KB
5 CDS

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whole genome shotgun sequence
NZ_AANL01000018
3.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AANL01000019
3.0 KB
3 CDS

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whole genome shotgun sequence
NZ_AANL01000020
2.9 KB
2 CDS

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whole genome shotgun sequence
NZ_AANL01000021
2.8 KB
3 CDS

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whole genome shotgun sequence
NZ_AANL01000022
2.8 KB
6 CDS

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whole genome shotgun sequence
NZ_AANL01000023
2.2 KB
2 CDS

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whole genome shotgun sequence
NZ_AANL01000024
1.8 KB
2 CDS

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whole genome shotgun sequence
NZ_AANL01000025
1.8 KB
4 CDS

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whole genome shotgun sequence
NZ_AANL01000026
1.6 KB
1 CDS

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whole genome shotgun sequence
NZ_AANL01000027
1.5 KB
2 CDS

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whole genome shotgun sequence
NZ_AANL01000028
1.4 KB
2 CDS

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whole genome shotgun sequence
NZ_AANL01000029
1.3 KB
1 CDS

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whole genome shotgun sequence
NZ_AANL01000030
1.3 KB
3 CDS

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whole genome shotgun sequence
NZ_AANL01000031
1.3 KB
2 CDS

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whole genome shotgun sequence
NZ_AANL01000032
1.2 KB
1 CDS

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whole genome shotgun sequence
NZ_AANL01000033
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AANL01000034
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AANL01000035
1.1 KB
2 CDS

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whole genome shotgun sequence
NZ_AANL01000036
1.1 KB
1 CDS

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whole genome shotgun sequence
NZ_AANL01000037
1004 bytes
2 CDS

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whole genome shotgun sequence
NZ_AANL01000038
992 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000039
961 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000040
952 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000041
922 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000042
895 bytes
2 CDS

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whole genome shotgun sequence
NZ_AANL01000043
891 bytes
2 CDS

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whole genome shotgun sequence
NZ_AANL01000044
828 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000045
799 bytes
2 CDS

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whole genome shotgun sequence
NZ_AANL01000046
799 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000047
781 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000048
772 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000049
717 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000050
625 bytes
2 CDS

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whole genome shotgun sequence
NZ_AANL01000051
594 bytes
0 CDS

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whole genome shotgun sequence
NZ_AANL01000052
466 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000053
454 bytes
0 CDS

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whole genome shotgun sequence
NZ_AANL01000054
422 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000055
414 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000056
370 bytes
0 CDS

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whole genome shotgun sequence
NZ_AANL01000057
321 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000058
307 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000059
270 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000060
249 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000061
244 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000062
240 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000063
236 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000064
218 bytes
0 CDS

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whole genome shotgun sequence
NZ_AANL01000065
197 bytes
1 CDS

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whole genome shotgun sequence
NZ_AANL01000066
175 bytes
1 CDS

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References

Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters
Wu,D., Daugherty,S.C., Van Aken,S.E., Pai,G.H., Watkins,K.L., Khouri,H., Tallon,L.J., Zaborsky,J.M., Dunbar,H.E., Tran,P.L., Moran,N.A. and Eisen,J.A. PLoS Biol. 4 (6), E188 (2006)
PubMed, PubGet, HubMed

Taxonomy

External Links

Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)

Search Genome

Sequences

References

Related Genomes