Capnocytophaga sputigena ATCC 33612

J. Craig Venter Institute

Genome Size: 4.0 megabases, GC Content: 38.4%, Released Date: Nov. 21, 2008 #17917

incomplete

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ABZV01000001
280.0 KB
255 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000002
205.4 KB
179 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000003
190.8 KB
166 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000004
189.7 KB
172 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000005
173.0 KB
166 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000006
152.3 KB
163 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000007
151.5 KB
173 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000008
150.9 KB
141 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000009
127.9 KB
114 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000010
117.8 KB
106 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000011
84.8 KB
86 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000012
83.1 KB
60 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000013
77.1 KB
50 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000014
76.8 KB
76 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000015
76.8 KB
74 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000016
66.9 KB
57 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000017
58.1 KB
56 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000018
50.8 KB
46 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000019
50.6 KB
48 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000020
44.4 KB
40 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000021
37.9 KB
39 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000022
34.4 KB
55 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000023
33.4 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000024
29.7 KB
24 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000025
29.6 KB
30 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000026
26.9 KB
15 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000027
26.9 KB
25 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000028
26.4 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000029
24.7 KB
33 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000030
22.3 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000031
20.4 KB
17 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000032
19.6 KB
8 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000033
17.5 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000034
15.9 KB
16 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000035
14.2 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000036
14.0 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000037
13.0 KB
13 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000038
12.1 KB
10 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000039
10.3 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000040
9.6 KB
9 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000041
8.8 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000042
8.6 KB
11 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000043
7.1 KB
5 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000044
6.0 KB
6 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000045
5.9 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000046
5.6 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000047
5.5 KB
7 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000048
4.3 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000049
3.9 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000050
3.8 KB
3 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000051
3.3 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000052
3.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000053
2.6 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000054
1.7 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000055
1.6 KB
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000056
1.5 KB
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000057
1.2 KB
2 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000058
1015 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000059
811 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000060
796 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000061
773 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000062
724 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000063
571 bytes
1 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000064
570 bytes
0 CDS

Table view
Circular View
Artemis Viewer

whole genome shotgun sequence
NZ_ABZV01000065
510 bytes
0 CDS

Table view
Circular View
Artemis Viewer

Taxonomy

External Links

Capnocytophaga sputigena ATCC 33612

Search Genome

Sequences

PubMed Search for Capnocytophaga sputigena ATCC 33612

Related Genomes