Chlamydia muridarum Nigg

UMIGS

Genome Size: 1.0 megabases, Released Date: June 4, 2009 #17923

incomplete

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

whole genome shotgun sequence
NZ_ACOV01000001
130.6 KB
115 CDS

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whole genome shotgun sequence
NZ_ACOV01000002
16.7 KB
12 CDS

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whole genome shotgun sequence
NZ_ACOV01000003
748.3 KB
657 CDS

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whole genome shotgun sequence
NZ_ACOV01000004
142.6 KB
148 CDS

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whole genome shotgun sequence
NZ_ACOV01000005
7.3 KB
8 CDS

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References

Strain and virulence diversity in the mouse pathogen Chlamydia muridarum
Ramsey,K.H., Sigar,I.M., Schripsema,J.H., Denman,C.J., Bowlin,A.K., Meyers,G.A. and Rank,R.G. Infect. Immun. (2009) In press
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydia muridarum Nigg

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Sequences

References

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