Chlamydia trachomatis A/HAR-13

Lab of Human Bacterial Pathogenesis

Genome Size: 1.01 megabases, GC Content: 41.3%, Released Date: Sept. 23, 2005 #16845

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_007429
1020.0 KB
911 CDS

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plasmid pCTA
NC_007430
7.3 KB
8 CDS

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References

Comparative Genomic Analysis of Chlamydia trachomatis Oculotropic and Genitotropic Strains
Carlson,J.H., Porcella,S.F., McClarty,G. and Caldwell,H.D. Infect. Immun. 73 (10), 6407-6418 (2005)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydia trachomatis A/HAR-13

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Sequences

References

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