Chlamydia trachomatis B/TZ1A828/OT

Wellcome Trust Sanger Institute

Genome Size: 1.0 megabases, GC Content: 41.3%, Released Date: May 11, 2009 #16847

Completed genome

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Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

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Allow mismatched bases

Sequences

complete genome
NC_012687
1019.8 KB
880 CDS

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References

Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain
Seth-Smith,H.M., Harris,S.R., Persson,K., Marsh,P., Barron,A., Bignell,A., Bjartling,C., Clark,L., Cutcliffe,L.T., Lambden,P.R., Lennard,N., Lockey,S.J., Quail,M.A., Salim,O., Skilton,R.J., Wang,Y., Holland,M.J., Parkhill,J., Thomson,N.R. and Clarke,I.N. BMC Genomics 10, 239 (2009)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydia trachomatis B/TZ1A828/OT

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Sequences

References

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