Chlamydia trachomatis D-LC

Integrated Genomics, Inc. , Rocky Mountain Laboratories, NIAID, NIH

Genome Size: 1.0075 megabases, Released Date: June 9, 2010 #19818

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
CP002054
1018.1 KB
870 CDS

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Circular View
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plasmid pCTDLC1
CP002055
7.3 KB
8 CDS

Table view
Circular View
Artemis Viewer

References

Frameshift Mutations in a Single Novel Virulence Factor Alter the In Vivo Pathogenicity of Chlamydia trachomatis for the Female Murine Genital Tract
Sturdevant,G.L., Kari,L., Gardner,D.J., Olivares-Zavaleta,N., Randall,L.B., Whitmire,W.M., Carlson,J.H., Goheen,M.M., Selleck,E.M., Martens,C. and Caldwell,H.D. Infect. Immun. 78 (9), 3660-3668 (2010)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydia trachomatis D-LC

Search Genome

Sequences

References

Related Genomes