Chlamydia trachomatis D/UW-3/CX

ChGP

Genome Size: 1.04 megabases, GC Content: 41.3%, Released Date: Oct. 23, 1998 #16848

Completed genome

Search Genome

Annotation search: search for genes and features in this genome

BLAST search: search for nucleotide or protein sequences in this genome

Pattern search: search for specific short patterns in this genome

This tool allows you to search within a genome for short DNA sequence patterns, such as a binding site consensus sequence. You can use any IUPAC code, so Ns, Rs, Ys etc. are allowed. Multipliers are contained in parentheses, so you can say A(14), which means a run of 14 As, or A(5 15) which means between 5 and 15 As. Square brackets indicate classes, so [AT] means either A or T. You can also have negatated classes (indicated by braces), so {AT} means neither A nor T. This tool uses the program fuzznuc, part of the EMBOSS software suite- see here for further documentation.

Restrict to region: bp. upstream of a gene
Leave blank for no restriction.

Report matches:

Allow mismatched bases

Sequences

complete genome
NC_000117
1018.1 KB
895 CDS

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References

Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis
Stephens,R.S., Kalman,S., Lammel,C.J., Fan,J., Marathe,R., Aravind,L., Mitchell,W.P., Olinger,L., Tatusov,R.L., Zhao,Q., Koonin,E.V. and Davis,R.W. Science 282 (5389), 754-759 (1998)
PubMed, PubGet, HubMed

Taxonomy

External Links

Chlamydia trachomatis D/UW-3/CX

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Sequences

References

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